This is the sense of graph in combinatorics; the other sense in high-school algebra, which interprets a morphism as a subobject of the product , is unrelated; see graph of a function for more on this.
Let and be sets; call an element of a vertex and an element of an edge. A graph is given by , , and a mapping that interprets edges as pairs of vertices. Exactly what this means depends on how one defines ‘mapping that interprets’ and ‘pair’; the possibilities are given below. We will need the following notation:
We are now ready for the first batch of definitions.
For a simple graph, a pair of vertices is a subset of of cardinality , and we interpret edges as unordered pairs of vertices in a one-to-one way. Thus a simple graph is given by , , and an injective function . Among graph theorists, this is the standard meaning of ‘graph’ unless another is specified.
For a multigraph, a pair of vertices is the same as above, but we interpret edges as pairs of vertices in a many-to-one way. Thus a multigraph is given by , , and an arbitrary function .
For a loop graph, a pair of vertices is any subset of the form , where is allowed, and we interpret edges as pairs of vertices in a one-to-one way again. Thus a loop-graph is given by , , and an injective function .
For a pseudograph, a pair of vertices is as in a loop graph, while edges are interpreted as pairs of vertices as in a multigraph. Thus a pseudograph is given by , , and a function .
Note: While ‘simple graph’ is unambiguous, the other terms above are not. In particular, ‘multigraph’ sometimes means a pseudograph, ‘pseudograph’ sometimes means a loop graph, and ‘loop graph’ sometimes means a pseudograph. These could be made unambiguous by saying ‘simple multigraph’, ‘simple loop graph’, and ‘multipseudograph’, respectively, but we will try to keep our terminology short.
In all four of the above, edges are interpreted as unordered pairs. If we instead interpret edges as ordered pairs, then we get four new concepts:
The same terminological ambiguities as above apply here as well, and they can be resolved in the same way, including using ‘simple directed graph’ for a directed graph if necessary. One can also use ‘undirected’ in place of ‘directed’ to emphasise that the previous definitions apply instead of these.
It is always possible to interpret any kind of graph as a directed pseudograph (a quiver), in which there happens to be at most one edge between a given pair of vertices, or there happen to be no loops (or alternatively exactly one of every possible kind of loop), or in which there is an edge from to if and only if there is an edge from to , or some mixture of these.
The term arc is often used for an ordered edge, while line is sometimes used for an unordered edge. We say that an arc with is an arc from to , while a line such that is a line between and . In either case, a loop is an edge from a vertex to itself or between a vertex and itself; only (possibly directed) loop graphs and pseudographs can have loops.
Given any sort of graph, we can define a binary relation on ; say that and are adjacent, written , if there exists an edge such that or . A directed loop graph is determined entirely by this relation; we may say that it is equipped with a binary relation. Then a simple directed graph is equipped with an irreflexive relation (or equivalently a reflexive relation), and an undirected loop graph is equipped with a symmetric relation.
A graph is finite if and are both finite sets. Given a linear ordering of the vertices of a finite graph, its adjacency matrix is a square matrix whose th entry gives the number of edges between the th and th vertices or from the th vertex to the th vertex. In the examples above where a graph is determined by a binary relation on , then matrix multiplication gives composition of relations.
An isomorphism from to consists of a bijection , together with a bijection from to (also denoted ) such that commutes with ; that is, or whenever or (as appropriate). Two graphs and are isomorphic if there exists such an isomorphism. Then finite graphs and are isomorphic if and only if they have the same number of vertices and, for some ordering of their vertices, they have the same adjacency matrix.
A morphism from to should consist of functions and such that commutes with . However, some authors allow to be undefined if or but when using a notion of graph where loops are forbidden. The difference amounts to whether one interprets a simple graph as a special kind of loop graph in which no loops exist (the first kind of morphism) or in which each vertex has a unique loop (the second kind of morphism). Either way, an isomorphism (as defined above) is precisely an invertible morphism.
Mike Shulman: Isn’t there something backwards about defining “isomorphic” and then “isomorphism” and then “morphism”? Doesn’t the logic generally flow in the other direction (especially around here)?
David Roberts: well at least there’s a historical precedent: this is how Bourbaki would have done it via structures :)
Toby: That, and it's simpler to state the definition of ‘isomorphic’ than ‘isomorphism’. Not to mention that graph theorists, in my experience, tend to care much more about the property of being isomorphic than the structure of having an isomorphism. As for ‘morphism’, there's even disagreement about what that should be; I think that my definition is the obvious correct one, but it disagrees with the one at, for example, Wikipedia (although they had my definition in the past); both versions give the same notion of isomorphism, however.
Mike Shulman: Well, but we aren’t graph theorists here, are we? Isn’t it okay for us to rephrase their definitions in the more categorically sensible order?
Toby: I disagree that ‘morphism’ before ‘isomorphism’ is more categorially sensible. That's like defining before ; sometimes useful, sometimes not. Since I am getting ambiguity about morphisms in what I find online, I'd prefer to do isomorphisms first. With luck, I'll find some terminology to distinguish the two kinds of morphisms, or we can make up our own.
Mike Shulman: Okay, I’ll accept that sometimes it makes sense to have isomorphisms before morphisms. Certainly there are other situations in which the notion of isomorphism is more obvious, or less subject to debate, than the notion of morphism. But I am happy that now “isomorphism” comes before “isomorphic.”
RonnieBrown: I hope it is helpful to add the reference below, which also contains quite a few references to categorical treatments of graphs.
Under the second notion of morphism (where simple graphs are identified with sets equipped with a symmetric reflexive relation), the category of simple graphs has many desirable properties (q.v.).
Frank Harary (1969), Graph Theory, Addison-Wesley.
Frank Harary and E.M. Palmer (1973), Graphical Enumeration, Academic Press.
Ronnie Brown, I. Morris, J. Shrimpton, and C.D. Wensley (2008), Graphs of Morphisms of Graphs, Electronic Journal of Combinatorics, A1 of Volume 15(1), 1–28.
Bill Lawvere (1989), Qualitative distinctions between some toposes of generalized graphs, in Categories in computer science and logic (Boulder, CO, 1987), volume 92 of Contemporary Mathematics, 261–299. American Mathematical Society, Providence, RI.
E. Babson, H. Barcelo, M. de Longueville, R. Laubenbacher, A Homotopy Theory for Graphs, arXiv:math/0403146